Experimental Design

Illumina offers both sequencing and microarray experimental design software options. Design your experiment, set up runs, and prepare for analysis.

Create Custom Sequencing Panels with DesignStudio

DesignStudio helps you create Illumina custom targeted sequencing panels for TruSeq Custom Amplicon, Nextera Rapid Capture Custom, and Targeted RNA Expression sample preparation kits. DesignStudio guides you through the selection of targets, submission and review of designs, and purchase of complete sample prep kits. Learn more about DesignStudio »

Prepare MiSeq or HiSeq Runs with Illumina Experiment Manager

Illumina Experiment Manager guides you through the creation of sample sheets prior to a MiSeq or HiSeq sequencer run. The built-in validation checks to ensure that you minimize or eliminate any sample sheet errors.  Learn more about Illumina Experiment Manager »

Build Custom Genotyping Assays with Assay Design Tool

Assay Design Tool is Illumina’s portal for designing custom genotyping microarray experiments. Design content for iSelect microarrays and GoldenGate genotyping assays. Create assays tailored directly to specific needs for targeted region genotyping or fine-mapping with Custom Infinium DNA Analysis arrays. Learn more about Assay Design Tool »

See BaseSpace Prep in Action

Learn about the NextSeq 500 sequencer, and see how BaseSpace Prep helps manage sequencing runs.
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DesignStudio Tutorial

Learn how to design TruSeq Custom Amplicon Panels in DesignStudio.

Plan and Design your NextSeq Run with BaseSpace Prep

BaseSpace Prep helps you prepare samples, create libraries, and set up sequencing runs in four easy steps.
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